Raspberry Pi, YOLO, Python & Computer Vision Pro for Independent Research Project

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What I Need Help With

I have already set up my Raspberry Pi 5 and microscope camera. I am looking for someone to help implement the software pipeline for my project.

Specifically, I need assistance with:

Setting up and organizing the Python project structure.

Use machine learning to be able to identify changes in morphology for each group over time (16 different experimental groups = 16 analysis folders to be compared to each other through ML)

Building an automated workflow that processes microscope images using a custom-trained YOLO (Ultralytics) model.

Running object detection on microscope images of Microcystis aeruginosa colonies.

Extracting quantitative measurements from each detected colony, including colony count, area, equivalent diameter, circularity, and density.

Automatically exporting all measurements into a CSV or Excel spreadsheet, with one row of data per image, and each piece of data being tracked based on which group it was taken from.

Saving annotated images showing the YOLO detections for later review.

Writing clean, modular, and well-documented Python code

Troubleshooting any software or integration issues that arise during development.

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